Publications

Broad-Host-Range Expression Reveals Native and Host Regulatory Elements That Influence Heterologous Antibiotic Production in Gram-Negative Bacteria

Zhang JJ, Tang X, Zhang M, Nguyen D, Moore BS

PMID: 28874475

Abstract

Heterologous expression has become a powerful tool for studying microbial biosynthetic gene clusters (BGCs). Here, we extend the transformation-associated recombination cloning and heterologous expression platform for microbial BGCs to include Gram-negative proteobacterial expression hosts. Using a broad-host-range expression platform, we test the implicit assumption that biosynthetic pathways are more successfully expressed in more closely related heterologous hosts. Cloning and expression of the violacein BGC from2ta16 revealed robust production in two proteobacterial hosts,KT2440 andLBA4404, but very little production of the antibiotic in various laboratory strains of, despite their closer phylogenetic relationship. We identified a nonclustered LuxR-type quorum-sensing receptor from2ta16, PviR, that increases pathway transcription and violacein production inby ∼60-fold independently of acyl-homoserine lactone autoinducers. Althoughharbors the most similar homolog of PviR identified from all of the hosts tested, overexpression of varioustranscription factors did not result in a statistically significant increase in violacein production, while overexpression of twoPviR homologs significantly increased production. Thus, this work not only introduces a new genetic platform for the heterologous expression of microbial BGCs, it also challenges the assumption that host phylogeny is an accurate predictor of host compatibility.Although Gram-positive heterologous hosts such ashave been developed and optimized to support diverse secondary metabolic reactions, there has been comparatively less work on Gram-negative hosts, some of which grow faster and are easier to work with. This work presents a new genetic platform for direct cloning and broad-host-range heterologous expression of BGCs in Gram-negative proteobacterial expression hosts, and we leverage this platform to uncover regulatory elements that influence violacein expression fromAlthough it is often assumed that BGCs will be more successfully expressed in more closely related hosts, our work suggests that this may not be a general rule of thumb, as heterologous production of natural products can be influenced by specific host regulatory and/or biosynthetic elements, and the identity and effectiveness of those elements are difficult to predict. We argue for the use of a diverse set of heterologous hosts, which may also provide insights into the BGC biosynthetic mechanism and the biological function of BGCs.